IL_7NWG_043

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_043 not in the Motif Atlas

Geometric match to IL_5TBW_009

Geometric discrepancy: 0.3405

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7NWG|1|51|C|1097
7NWG|1|51|G|1098
*
7NWG|1|51|C|1197
7NWG|1|51|G|1198
7NWG|1|51|G|1199

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain S3

60S ribosomal protein L18a

Chain T3

eL21