IL_7NWG_052

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7NWG|1|51|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_052 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.1893

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7NWG|1|51|C|1467
7NWG|1|51|C|1468
*
7NWG|1|51|G|1496
7NWG|1|51|A|1497
7NWG|1|51|G|1498

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain Q3

L18

Chain a3

uL15

Chain b3

eL29