IL_7NWG_068

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_068 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.3907

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7NWG|1|51|G|1753
7NWG|1|51|U|1754
7NWG|1|51|C|1755
7NWG|1|51|U|1756
*
7NWG|1|51|A|1776
7NWG|1|51|C|1777

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain q3

Transfer RNA; tRNA