IL_7NWG_074

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

7NWG|1|51|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_074 not in the Motif Atlas

Geometric match to IL_8GLP_078

Geometric discrepancy: 0.2254

The information below is about IL_8GLP_078

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

7NWG|1|51|C|1920
7NWG|1|51|C|1921
7NWG|1|51|G|1922
*
7NWG|1|51|C|2062
7NWG|1|51|G|2063

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain M3

Ribosomal protein L14

Chain O3

60S RIBOSOMAL PROTEIN UL13

Chain S3

60S ribosomal protein L18a

Chain f3

eL33