IL_7NWG_088
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGCAG*CGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 7NWG|1|51|U|2687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_088 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3264
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7NWG|1|51|G|2644
7NWG|1|51|G|2645
7NWG|1|51|C|2646
7NWG|1|51|A|2647
7NWG|1|51|G|2648
*
7NWG|1|51|C|2685
7NWG|1|51|G|2686
7NWG|1|51|U|2687
7NWG|1|51|G|2688
7NWG|1|51|C|2689
7NWG|1|51|C|2690
Current chains
- Chain 51
- 28S Ribosomal RNA
Nearby chains
- Chain g3
- 60S ribosomal protein L34
- Chain k3
- L38
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