IL_7NWG_108

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAGACAUGA*UGAUCGUUUUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|A|3943
7NWG|1|51|G|3944
7NWG|1|51|A|3945
7NWG|1|51|G|3946
7NWG|1|51|A|3947
7NWG|1|51|C|3948
7NWG|1|51|A|3949
7NWG|1|51|U|3950
7NWG|1|51|G|3951
7NWG|1|51|A|3952
*
7NWG|1|51|U|4060
7NWG|1|51|G|4061
7NWG|1|51|A|4062
7NWG|1|51|U|4063
7NWG|1|51|C|4064
7NWG|1|51|G|4065
7NWG|1|51|U|4066
7NWG|1|51|U|4067
7NWG|1|51|U|4068
7NWG|1|51|U|4069
7NWG|1|51|U|4070

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain i3

60S ribosomal protein L36

Chain w3

Ribosomal protein