IL_7NWG_111

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7NWG|1|51|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_111 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.1796

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7NWG|1|51|G|4191
7NWG|1|51|A|4192
*
7NWG|1|51|U|4202
7NWG|1|51|A|4203
7NWG|1|51|C|4204

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42