IL_7NWG_114

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_114 not in the Motif Atlas

Geometric match to IL_7RQB_091

Geometric discrepancy: 0.2123

The information below is about IL_7RQB_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7NWG|1|51|U|4295
7NWG|1|51|U|4296
7NWG|1|51|G|4297
*
7NWG|1|51|C|4314
7NWG|1|51|A|4315

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain Q3

L18

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42