3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCAUG*CAGGCG
Length
11 nucleotides
Bulged bases
7NWG|1|51|C|4720
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NWG_127 not in the Motif Atlas
Geometric match to IL_5J7L_274
Geometric discrepancy: 0.3812
The information below is about IL_5J7L_274
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7NWG|1|51|C|4582
7NWG|1|51|C|4583
7NWG|1|51|A|4584
7NWG|1|51|U|4585
7NWG|1|51|G|4586
*
7NWG|1|51|C|4716
7NWG|1|51|A|4717
7NWG|1|51|G|4718
7NWG|1|51|G|4719
7NWG|1|51|C|4720
7NWG|1|51|G|4721

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain B3
uL3
Chain O3
60S RIBOSOMAL PROTEIN UL13

Coloring options:


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