IL_7NWG_132

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CAAUG

Length

8 nucleotides

Bulged bases

7NWG|1|51|A|4656, 7NWG|1|51|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_132 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3198

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7NWG|1|51|U|4641
7NWG|1|51|U|4642
7NWG|1|51|G|4643
*
7NWG|1|51|C|4654
7NWG|1|51|A|4655
7NWG|1|51|A|4656
7NWG|1|51|U|4657
7NWG|1|51|G|4658

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain R3

60S ribosomal protein L19

Chain d3

eL31