IL_7NWG_136

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

7NWG|1|51|C|4757, 7NWG|1|51|U|4758, 7NWG|1|51|A|4764, 7NWG|1|51|G|4870, 7NWG|1|51|C|4871, 7NWG|1|51|G|4873, 7NWG|1|51|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|4756
7NWG|1|51|C|4757
7NWG|1|51|U|4758
7NWG|1|51|C|4759
7NWG|1|51|G|4760
7NWG|1|51|G|4761
7NWG|1|51|A|4762
7NWG|1|51|U|4763
7NWG|1|51|A|4764
7NWG|1|51|G|4765
7NWG|1|51|C|4766
*
7NWG|1|51|G|4868
7NWG|1|51|U|4869
7NWG|1|51|G|4870
7NWG|1|51|C|4871
7NWG|1|51|G|4872
7NWG|1|51|G|4873
7NWG|1|51|A|4874
7NWG|1|51|G|4875
7NWG|1|51|A|4876
7NWG|1|51|G|4877

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain H3

L9

Chain M3

Ribosomal protein L14

Chain O3

60S RIBOSOMAL PROTEIN UL13

Chain S3

60S ribosomal protein L18a