IL_7NWG_158

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7NWG|1|A2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_158 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3385

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7NWG|1|A2|C|37
7NWG|1|A2|A|38
7NWG|1|A2|A|39
7NWG|1|A2|A|40
*
7NWG|1|A2|U|514
7NWG|1|A2|G|515
7NWG|1|A2|A|516
7NWG|1|A2|C|517
7NWG|1|A2|G|518

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain K2

40S ribosomal protein S9

Chain Z2

40S ribosomal protein S24