IL_7NWG_164

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7NWG|1|A2|G|113, 7NWG|1|A2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_164 not in the Motif Atlas

Geometric match to IL_4WF9_071

Geometric discrepancy: 0.2669

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7NWG|1|A2|U|112
7NWG|1|A2|G|113
7NWG|1|A2|G|114
7NWG|1|A2|U|115
*
7NWG|1|A2|A|348
7NWG|1|A2|A|349

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain J2

40S ribosomal protein S8

Chain M2

40S ribosomal protein S11