IL_7NWG_169

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_169 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3544

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7NWG|1|A2|C|188
7NWG|1|A2|U|189
7NWG|1|A2|G|190
7NWG|1|A2|A|191
7NWG|1|A2|C|192
*
7NWG|1|A2|G|207
7NWG|1|A2|G|208
7NWG|1|A2|A|209
7NWG|1|A2|U|210
7NWG|1|A2|G|211

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S8