IL_7NWG_171

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

7NWG|1|A2|A|313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_171 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.4067

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7NWG|1|A2|G|312
7NWG|1|A2|A|313
7NWG|1|A2|U|314
*
7NWG|1|A2|A|336
7NWG|1|A2|C|337

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain H2

40S ribosomal protein S6