IL_7NWG_172

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUCAAC*GUGACCACGG

Length

18 nucleotides

Bulged bases

7NWG|1|A2|U|361, 7NWG|1|A2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|C|358
7NWG|1|A2|U|359
7NWG|1|A2|A|360
7NWG|1|A2|U|361
7NWG|1|A2|C|362
7NWG|1|A2|A|363
7NWG|1|A2|A|364
7NWG|1|A2|C|365
*
7NWG|1|A2|G|395
7NWG|1|A2|U|396
7NWG|1|A2|G|397
7NWG|1|A2|A|398
7NWG|1|A2|C|399
7NWG|1|A2|C|400
7NWG|1|A2|A|401
7NWG|1|A2|C|402
7NWG|1|A2|G|403
7NWG|1|A2|G|404

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S8

Chain M2

40S ribosomal protein S11

Chain Y2

Ribosomal protein S23