IL_7NWG_180

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACU*AGGCCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|G|534
7NWG|1|A2|G|535
7NWG|1|A2|A|536
7NWG|1|A2|C|537
7NWG|1|A2|U|538
*
7NWG|1|A2|A|545
7NWG|1|A2|G|546
7NWG|1|A2|G|547
7NWG|1|A2|C|548
7NWG|1|A2|C|549
7NWG|1|A2|C|550

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain f2

40S ribosomal protein S30