IL_7NWG_194

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCCGGGGG*CCAAGAAUG

Length

19 nucleotides

Bulged bases

7NWG|1|A2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|C|927
7NWG|1|A2|G|928
7NWG|1|A2|G|929
7NWG|1|A2|C|930
7NWG|1|A2|C|931
7NWG|1|A2|G|932
7NWG|1|A2|G|933
7NWG|1|A2|G|934
7NWG|1|A2|G|935
7NWG|1|A2|G|936
*
7NWG|1|A2|C|1006
7NWG|1|A2|C|1007
7NWG|1|A2|A|1008
7NWG|1|A2|A|1009
7NWG|1|A2|G|1010
7NWG|1|A2|A|1011
7NWG|1|A2|A|1012
7NWG|1|A2|U|1013
7NWG|1|A2|G|1014

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain O2

ribosomal protein uS15

Chain b2

40S ribosomal protein S26

Chain c2

40S ribosomal protein S27

Chain c3

eL30