IL_7NWG_195
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAU*AGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_195 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2039
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7NWG|1|A2|C|941
7NWG|1|A2|G|942
7NWG|1|A2|U|943
7NWG|1|A2|A|944
7NWG|1|A2|U|945
*
7NWG|1|A2|A|981
7NWG|1|A2|G|982
7NWG|1|A2|A|983
7NWG|1|A2|C|984
7NWG|1|A2|G|985
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain A3
- L8
- Chain C2
- 40S ribosomal protein S3a
- Chain P2
- uS11
- Chain b2
- 40S ribosomal protein S26
- Chain p3
- ribosomal protein eL43
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