IL_7NWG_200

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_200 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2125

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7NWG|1|A2|G|1108
7NWG|1|A2|C|1109
7NWG|1|A2|G|1110
*
7NWG|1|A2|C|1123
7NWG|1|A2|C|1124

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain B2

40S ribosomal protein SA

Chain C2

40S ribosomal protein S3a

Chain S2

40S ribosomal protein S17

Chain c2

40S ribosomal protein S27