IL_7NWG_205

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_205 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.3462

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7NWG|1|A2|G|1227
7NWG|1|A2|A|1228
*
7NWG|1|A2|U|1530
7NWG|1|A2|A|1531
7NWG|1|A2|C|1532

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain G2

Ribosomal protein S5

Chain T2

40S ribosomal protein uS13

Chain U2

S19