IL_7NWG_207

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_207 not in the Motif Atlas

Geometric match to IL_4V88_445

Geometric discrepancy: 0.2335

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7NWG|1|A2|G|1235
7NWG|1|A2|G|1236
*
7NWG|1|A2|C|1521
7NWG|1|A2|A|1522
7NWG|1|A2|C|1523

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain Q2

40S ribosomal protein uS19

Chain T2

40S ribosomal protein uS13