IL_7NWG_216

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

7NWG|1|A2|C|1403, 7NWG|1|A2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_216 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.2189

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|A|1402
7NWG|1|A2|C|1403
7NWG|1|A2|U|1404
7NWG|1|A2|A|1405
7NWG|1|A2|G|1406
*
7NWG|1|A2|C|1440
7NWG|1|A2|U|1441
7NWG|1|A2|U|1442
7NWG|1|A2|C|1443
7NWG|1|A2|U|1444

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain R2

Ribosomal protein S16

Chain V2

40S ribosomal protein S20