IL_7NWG_218

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_218 not in the Motif Atlas

Geometric match to IL_5TBW_115

Geometric discrepancy: 0.2572

The information below is about IL_5TBW_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7NWG|1|A2|A|1537
7NWG|1|A2|C|1538
7NWG|1|A2|U|1539
*
7NWG|1|A2|A|1594
7NWG|1|A2|U|1595
7NWG|1|A2|U|1596

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain G2

Ribosomal protein S5

Chain T2

40S ribosomal protein uS13

Chain U2

S19

Chain a2

ribosomal protein eS25