IL_7NWG_220

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_220 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.2499

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7NWG|1|A2|U|1560
7NWG|1|A2|A|1561
7NWG|1|A2|C|1562
*
7NWG|1|A2|G|1573
7NWG|1|A2|C|1574
7NWG|1|A2|G|1575

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain U2

S19