IL_7NWG_228

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_228 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2167

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7NWG|1|A2|G|1737
7NWG|1|A2|C|1738
7NWG|1|A2|C|1739
*
7NWG|1|A2|G|1796
7NWG|1|A2|U|1797

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain J2

40S ribosomal protein S8