IL_7NWG_233

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_233 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.294

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7NWG|1|q3|C|51
7NWG|1|q3|G|52
*
7NWG|1|q3|C|62
7NWG|1|q3|G|63
7NWG|1|q3|G|64

Current chains

Chain q3

A/P-Site tRNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain I3

60S ribosomal protein L10