IL_7NWG_245

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGGUGGCCCGGG*CCGGGUGUUACAGC

Length

28 nucleotides

Bulged bases

7NWG|1|51|G|748, 7NWG|1|51|U|914, 7NWG|1|51|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|745
7NWG|1|51|A|746
7NWG|1|51|A|747
7NWG|1|51|G|748
7NWG|1|51|G|749
7NWG|1|51|U|750
7NWG|1|51|G|751
7NWG|1|51|G|752
7NWG|1|51|C|753
7NWG|1|51|C|754
7NWG|1|51|C|755
7NWG|1|51|G|756
7NWG|1|51|G|757
7NWG|1|51|G|758
*
7NWG|1|51|C|906
7NWG|1|51|C|907
7NWG|1|51|G|908
7NWG|1|51|G|909
7NWG|1|51|G|910
7NWG|1|51|U|911
7NWG|1|51|G|912
7NWG|1|51|U|913
7NWG|1|51|U|914
7NWG|1|51|A|915
7NWG|1|51|C|916
7NWG|1|51|A|917
7NWG|1|51|G|918
7NWG|1|51|C|919

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain H3

L9

Chain M3

Ribosomal protein L14

Chain S3

60S ribosomal protein L18a