IL_7NWG_262

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUGUCAAAGU*AAUGAAGCGC

Length

22 nucleotides

Bulged bases

7NWG|1|51|A|3711, 7NWG|1|51|G|3735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|3710
7NWG|1|51|A|3711
7NWG|1|51|A|3712
7NWG|1|51|U|3713
7NWG|1|51|G|3714
7NWG|1|51|U|3715
7NWG|1|51|C|3716
7NWG|1|51|A|3717
7NWG|1|51|A|3718
7NWG|1|51|A|3719
7NWG|1|51|G|3720
7NWG|1|51|U|3721
*
7NWG|1|51|A|3732
7NWG|1|51|A|3733
7NWG|1|51|U|3734
7NWG|1|51|G|3735
7NWG|1|51|A|3736
7NWG|1|51|A|3737
7NWG|1|51|G|3738
7NWG|1|51|C|3739
7NWG|1|51|G|3740
7NWG|1|51|C|3741

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

L8

Chain i3

60S ribosomal protein L36