IL_7NWG_265

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGUAGAAUAAGUGGGAG*CGCCGGUGAAAUACCACUAC

Length

39 nucleotides

Bulged bases

7NWG|1|51|U|3957, 7NWG|1|51|G|3958, 7NWG|1|51|A|3962, 7NWG|1|51|U|3964, 7NWG|1|51|C|4041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|3955
7NWG|1|51|G|3956
7NWG|1|51|U|3957
7NWG|1|51|G|3958
7NWG|1|51|U|3959
7NWG|1|51|A|3960
7NWG|1|51|G|3961
7NWG|1|51|A|3962
7NWG|1|51|A|3963
7NWG|1|51|U|3964
7NWG|1|51|A|3965
7NWG|1|51|A|3966
7NWG|1|51|G|3967
7NWG|1|51|U|3968
7NWG|1|51|G|3969
7NWG|1|51|G|3970
7NWG|1|51|G|3971
7NWG|1|51|A|3972
7NWG|1|51|G|3973
*
7NWG|1|51|C|4038
7NWG|1|51|G|4039
7NWG|1|51|C|4040
7NWG|1|51|C|4041
7NWG|1|51|G|4042
7NWG|1|51|G|4043
7NWG|1|51|U|4044
7NWG|1|51|G|4045
7NWG|1|51|A|4046
7NWG|1|51|A|4047
7NWG|1|51|A|4048
7NWG|1|51|U|4049
7NWG|1|51|A|4050
7NWG|1|51|C|4051
7NWG|1|51|C|4052
7NWG|1|51|A|4053
7NWG|1|51|C|4054
7NWG|1|51|U|4055
7NWG|1|51|A|4056
7NWG|1|51|C|4057

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain a2

ribosomal protein eS25

Chain w3

Ribosomal protein