IL_7NWG_268

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

7NWG|1|51|G|4527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_268 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.259

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7NWG|1|51|C|4453
7NWG|1|51|G|4454
7NWG|1|51|G|4455
*
7NWG|1|51|C|4525
7NWG|1|51|U|4526
7NWG|1|51|G|4527
7NWG|1|51|G|4528

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 1

Sec61Beta

Chain B3

uL3

Chain V3

eL14