IL_7NWG_296

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGCGG*CACGCGCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|C|1230
7NWG|1|A2|C|1231
7NWG|1|A2|U|1232
7NWG|1|A2|G|1233
7NWG|1|A2|C|1234
7NWG|1|A2|G|1235
7NWG|1|A2|G|1236
*
7NWG|1|A2|C|1521
7NWG|1|A2|A|1522
7NWG|1|A2|C|1523
7NWG|1|A2|G|1524
7NWG|1|A2|C|1525
7NWG|1|A2|G|1526
7NWG|1|A2|C|1527
7NWG|1|A2|G|1528

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain Q2

40S ribosomal protein uS19

Chain R2

Ribosomal protein S16

Chain T2

40S ribosomal protein uS13

Chain U2

S19

Chain V2

40S ribosomal protein S20