3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUGCAUGG*UCUGUGAUGCC
Length
20 nucleotides
Bulged bases
7NWG|1|A2|C|1331, 7NWG|1|A2|U|1494, 7NWG|1|A2|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NWG|1|A2|G|1327
7NWG|1|A2|G|1328
7NWG|1|A2|U|1329
7NWG|1|A2|G|1330
7NWG|1|A2|C|1331
7NWG|1|A2|A|1332
7NWG|1|A2|U|1333
7NWG|1|A2|G|1334
7NWG|1|A2|G|1335
*
7NWG|1|A2|U|1492
7NWG|1|A2|C|1493
7NWG|1|A2|U|1494
7NWG|1|A2|G|1495
7NWG|1|A2|U|1496
7NWG|1|A2|G|1497
7NWG|1|A2|A|1498
7NWG|1|A2|U|1499
7NWG|1|A2|G|1500
7NWG|1|A2|C|1501
7NWG|1|A2|C|1502

Current chains

Chain A2
18S Ribosomal RNA

Nearby chains

Chain E2
40S ribosomal protein S3
Chain L2
40S ribosomal protein S10
Chain V2
40S ribosomal protein S20
Chain e2
uS14
Chain q3
Transfer RNA; tRNA
Chain v3
mRNA

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