IL_7NWG_302

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGCUAC*GUAAAAGUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|G|1706
7NWG|1|A2|U|1707
7NWG|1|A2|C|1708
7NWG|1|A2|G|1709
7NWG|1|A2|C|1710
7NWG|1|A2|U|1711
7NWG|1|A2|A|1712
7NWG|1|A2|C|1713
*
7NWG|1|A2|G|1820
7NWG|1|A2|U|1821
7NWG|1|A2|A|1822
7NWG|1|A2|A|1823
7NWG|1|A2|A|1824
7NWG|1|A2|A|1825
7NWG|1|A2|G|1826
7NWG|1|A2|U|1827
7NWG|1|A2|C|1828

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain Y2

Ribosomal protein S23

Chain n3

60s ribosomal protein l41

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA