IL_7NWG_310

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7NWG|1|51|C|1214, 7NWG|1|51|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_310 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.362

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7NWG|1|51|C|1082
7NWG|1|51|U|1083
7NWG|1|51|C|1084
*
7NWG|1|51|G|1213
7NWG|1|51|C|1214
7NWG|1|51|C|1215
7NWG|1|51|C|1216
7NWG|1|51|G|1217

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain F3

uL30

Chain b3

eL29