IL_7NWG_319

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7NWG|1|51|A|3901, 7NWG|1|51|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_319 not in the Motif Atlas

Homologous match to IL_8CRE_097

Geometric discrepancy: 0.1922

The information below is about IL_8CRE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NWG|1|51|G|3900
7NWG|1|51|A|3901
7NWG|1|51|A|3902
*
7NWG|1|51|U|4558
7NWG|1|51|A|4559
7NWG|1|51|C|4560
7NWG|1|51|C|4561

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 1

Sec61Beta

Chain B3

uL3