IL_7NWG_326

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_326 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.371

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7NWG|1|A2|G|108
7NWG|1|A2|U|109
7NWG|1|A2|U|110
7NWG|1|A2|A|111
7NWG|1|A2|U|112
*
7NWG|1|A2|A|349
7NWG|1|A2|C|350
7NWG|1|A2|G|351
7NWG|1|A2|U|352
7NWG|1|A2|C|353

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain J2

40S ribosomal protein S8

Chain M2

40S ribosomal protein S11