IL_7NWG_329

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7NWG|1|A2|U|368, 7NWG|1|A2|C|369, 7NWG|1|A2|G|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_329 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.2937

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7NWG|1|A2|U|366
7NWG|1|A2|U|367
7NWG|1|A2|U|368
7NWG|1|A2|C|369
7NWG|1|A2|G|370
7NWG|1|A2|A|371
*
7NWG|1|A2|U|393
7NWG|1|A2|G|394

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S8

Chain M2

40S ribosomal protein S11