IL_7NWG_330

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_330 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.2652

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

7NWG|1|A2|A|802
7NWG|1|A2|C|803
*
7NWG|1|A2|G|860
7NWG|1|A2|A|861
7NWG|1|A2|A|862
7NWG|1|A2|U|863

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain I2

ribosomal protein eS7

Chain M2

40S ribosomal protein S11

Chain X2

Ribosomal protein S15a

Chain Y2

Ribosomal protein S23