IL_7NWH_026

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCGG*CCC

Length

7 nucleotides

Bulged bases

7NWH|1|5|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_026 not in the Motif Atlas

Geometric match to IL_3GM7_003

Geometric discrepancy: 0.1665

The information below is about IL_3GM7_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7NWH|1|5|G|497
7NWH|1|5|C|498
7NWH|1|5|G|499
7NWH|1|5|G|500
*
7NWH|1|5|C|655
7NWH|1|5|C|656
7NWH|1|5|C|657

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain C

uL4