IL_7NWH_043

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

7NWH|1|5|G|1377, 7NWH|1|5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_043 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.1717

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7NWH|1|5|G|1360
7NWH|1|5|G|1361
*
7NWH|1|5|C|1376
7NWH|1|5|G|1377
7NWH|1|5|C|1378
7NWH|1|5|C|1379

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain C

uL4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15