IL_7NWH_051
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_051 not in the Motif Atlas
- Geometric match to IL_5J7L_310
- Geometric discrepancy: 0.3283
- The information below is about IL_5J7L_310
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
7NWH|1|5|C|1551
7NWH|1|5|G|1552
7NWH|1|5|A|1553
7NWH|1|5|A|1554
7NWH|1|5|G|1555
*
7NWH|1|5|U|1572
7NWH|1|5|G|1573
7NWH|1|5|G|1574
7NWH|1|5|A|1575
7NWH|1|5|G|1576
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain p
- ribosomal protein eL43
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