IL_7NWH_068
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_068 not in the Motif Atlas
- Geometric match to IL_6CZR_134
- Geometric discrepancy: 0.1793
- The information below is about IL_6CZR_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.5
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
7NWH|1|5|C|1911
7NWH|1|5|G|1912
7NWH|1|5|C|1913
7NWH|1|5|C|1914
7NWH|1|5|C|1915
7NWH|1|5|G|1916
7NWH|1|5|A|1917
7NWH|1|5|U|1918
*
7NWH|1|5|G|2064
7NWH|1|5|G|2065
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain F
- uL30
- Chain O
- 60S RIBOSOMAL PROTEIN UL13
- Chain S
- 60S ribosomal protein L18a
- Chain f
- eL33
Coloring options: