IL_7NWH_070

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

7NWH|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_070 not in the Motif Atlas

Geometric match to IL_4V88_384

Geometric discrepancy: 0.3729

The information below is about IL_4V88_384

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7NWH|1|5|C|1920
7NWH|1|5|C|1921
7NWH|1|5|G|1922
*
7NWH|1|5|C|2062
7NWH|1|5|G|2063

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain F

uL30

Chain M

Ribosomal protein L14

Chain O

60S RIBOSOMAL PROTEIN UL13

Chain S

60S ribosomal protein L18a

Chain f

eL33