IL_7NWH_075

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7NWH|1|5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_075 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.3457

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7NWH|1|5|G|2001
7NWH|1|5|A|2002
7NWH|1|5|G|2003
7NWH|1|5|U|2004
7NWH|1|5|G|2005
*
7NWH|1|5|C|2014
7NWH|1|5|U|2015
7NWH|1|5|C|2016

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL12