IL_7NWH_097
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 7NWH|1|5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_097 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1654
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7NWH|1|5|C|2867
7NWH|1|5|G|2868
7NWH|1|5|U|2869
7NWH|1|5|A|2870
7NWH|1|5|A|2871
7NWH|1|5|C|2872
*
7NWH|1|5|G|2877
7NWH|1|5|G|2878
7NWH|1|5|A|2879
7NWH|1|5|U|2880
7NWH|1|5|A|2881
7NWH|1|5|A|2882
7NWH|1|5|G|2883
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
- Chain p
- ribosomal protein eL43
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