IL_7NWH_101

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAGGC*GUGUUGACG

Length

16 nucleotides

Bulged bases

7NWH|1|5|A|3663, 7NWH|1|5|U|3679, 7NWH|1|5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_101 not in the Motif Atlas

Geometric match to IL_4V9F_065

Geometric discrepancy: 0.2928

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7NWH|1|5|C|3660
7NWH|1|5|G|3661
7NWH|1|5|A|3662
7NWH|1|5|A|3663
7NWH|1|5|G|3664
7NWH|1|5|G|3665
7NWH|1|5|C|3666
*
7NWH|1|5|G|3676
7NWH|1|5|U|3677
7NWH|1|5|G|3678
7NWH|1|5|U|3679
7NWH|1|5|U|3680
7NWH|1|5|G|3681
7NWH|1|5|A|3682
7NWH|1|5|C|3683
7NWH|1|5|G|3684

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L8

Chain p

ribosomal protein eL43