IL_7NWH_106
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_106 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.2304
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NWH|1|5|U|3715
7NWH|1|5|C|3716
7NWH|1|5|A|3717
7NWH|1|5|A|3718
7NWH|1|5|A|3719
7NWH|1|5|G|3720
7NWH|1|5|U|3721
*
7NWH|1|5|A|3732
7NWH|1|5|A|3733
7NWH|1|5|U|3734
7NWH|1|5|G|3735
7NWH|1|5|A|3736
7NWH|1|5|A|3737
7NWH|1|5|G|3738
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain i
- 60S ribosomal protein L36
- Chain o
- eL42
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