IL_7NWH_108

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7NWH|1|5|A|3785, 7NWH|1|5|C|3791, 7NWH|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_108 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.2218

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7NWH|1|5|C|3781
7NWH|1|5|C|3782
7NWH|1|5|A|3783
7NWH|1|5|A|3784
7NWH|1|5|A|3785
7NWH|1|5|U|3786
7NWH|1|5|G|3787
7NWH|1|5|C|3788
7NWH|1|5|C|3789
7NWH|1|5|U|3790
7NWH|1|5|C|3791
7NWH|1|5|G|3792
*
7NWH|1|5|C|3808
7NWH|1|5|G|3809
7NWH|1|5|C|3810
7NWH|1|5|G|3811

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41