IL_7NWH_123

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCUUG*UGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_123 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.3378

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7NWH|1|5|G|4401
7NWH|1|5|C|4402
7NWH|1|5|U|4403
7NWH|1|5|U|4404
7NWH|1|5|G|4405
*
7NWH|1|5|U|4439
7NWH|1|5|G|4440
7NWH|1|5|A|4441
7NWH|1|5|U|4442

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

eL29